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<title>UT Medical School Journal Articles</title>
<copyright>Copyright (c) 2013 Texas Medical Center Library All rights reserved.</copyright>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs</link>
<description>Recent documents in UT Medical School Journal Articles</description>
<language>en-us</language>
<lastBuildDate>Wed, 23 Jan 2013 22:34:43 PST</lastBuildDate>
<ttl>3600</ttl>








<item>
<title>Dominance of the proximal coordinate frame in determining the locations of hippocampal place cell activity during navigation.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/368</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/368</guid>
<pubDate>Fri, 24 Jun 2011 15:32:46 PDT</pubDate>
<description>
	<![CDATA[
	<p>The place-specific activity of hippocampal cells provides downstream structures with information regarding an animal's position within an environment and, perhaps, the location of goals within that environment. In rodents, recent research has suggested that distal cues primarily set the orientation of the spatial representation, whereas the boundaries of the behavioral apparatus determine the locations of place activity. The current study was designed to address possible biases in some previous research that may have minimized the likelihood of observing place activity bound to distal cues. Hippocampal single-unit activity was recorded from six freely moving rats as they were trained to perform a tone-initiated place-preference task on an open-field platform. To investigate whether place activity was bound to the room- or platform-based coordinate frame (or both), the platform was translated within the room at an "early" and at a "late" phase of task acquisition (Shift 1 and Shift 2). At both time points, CA1 and CA3 place cells demonstrated room-associated and/or platform-associated activity, or remapped in response to the platform shift. Shift 1 revealed place activity that reflected an interaction between a dominant platform-based (proximal) coordinate frame and a weaker room-based (distal) frame because many CA1 and CA3 place fields shifted to a location intermediate to the two reference frames. Shift 2 resulted in place activity that became more strongly bound to either the platform- or room-based coordinate frame, suggesting the emergence of two independent spatial frames of reference (with many more cells participating in platform-based than in room-based representations).</p>

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</description>

<author>Jennifer J Siegel et al.</author>


<category>Action Potentials</category>

<category>Animals</category>

<category>Brain Mapping</category>

<category>Conditioning (Psychology)</category>

<category>Cues</category>

<category>Decision Making</category>

<category>Dominance, Cerebral</category>

<category>Hippocampus</category>

<category>Male</category>

<category>Neural Pathways</category>

<category>Neurons</category>

<category>Neuropsychological Tests</category>

<category>Observer Variation</category>

<category>Orientation</category>

<category>Rats</category>

<category>Rats, Long-Evans</category>

<category>Reaction Time</category>

<category>Research Design</category>

<category>Reward</category>

<category>Space Perception</category>

</item>






<item>
<title>Wingless activity in the precursor cells specifies neuronal migratory behavior in the Drosophila nerve cord.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/367</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/367</guid>
<pubDate>Fri, 24 Jun 2011 15:32:42 PDT</pubDate>
<description>
	<![CDATA[
	<p>Neurons and their precursor cells are formed in different regions within the developing CNS, but they migrate and occupy very specific sites in the mature CNS. The ultimate position of neurons is crucial for establishing proper synaptic connectivity in the brain. In Drosophila, despite its extensive use as a model system to study neurogenesis, we know almost nothing about neuronal migration or its regulation. In this paper, I show that one of the most studied neuronal pairs in the Drosophila nerve cord, RP2/sib, has a complicated migratory route. Based on my studies on Wingless (Wg) signaling, I report that the neuronal migratory pattern is determined at the precursor cell stage level. The results show that Wg activity in the precursor neuroectodermal and neuroblast levels specify neuronal migratory pattern two divisions later, thus, well ahead of the actual migratory event. Moreover, at least two downstream genes, Cut and Zfh1, are involved in this process but their role is at the downstream neuronal level. The functional importance of normal neuronal migration and the requirement of Wg signaling for the process are indicated by the finding that mislocated RP2 neurons in embryos mutant for Wg-signaling fail to properly send out their axon projection.</p>

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</description>

<author>Krishna Moorthi Bhat</author>


<category>Animals</category>

<category>Cell Lineage</category>

<category>Cell Movement</category>

<category>Central Nervous System</category>

<category>DNA-Binding Proteins</category>

<category>Drosophila Proteins</category>

<category>Drosophila melanogaster</category>

<category>Homeodomain Proteins</category>

<category>Neurons</category>

<category>Nuclear Proteins</category>

<category>Proto-Oncogene Proteins</category>

<category>Repressor Proteins</category>

<category>Signal Transduction</category>

<category>Transcription Factors</category>

<category>Wnt1 Protein</category>

</item>






<item>
<title>Screening of gap junction antagonists on dye coupling in the rabbit retina.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/366</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/366</guid>
<pubDate>Fri, 24 Jun 2011 15:32:38 PDT</pubDate>
<description>
	<![CDATA[
	<p>Many cell types in the retina are coupled via gap junctions and so there is a pressing need for a potent and reversible gap junction antagonist. We screened a series of potential gap junction antagonists by evaluating their effects on dye coupling in the network of A-type horizontal cells. We evaluated the following compounds: meclofenamic acid (MFA), mefloquine, 2-aminoethyldiphenyl borate (2-APB), 18-alpha-glycyrrhetinic acid, 18-beta-glycyrrhetinic acid (18-beta-GA), retinoic acid, flufenamic acid, niflumic acid, and carbenoxolone. The efficacy of each drug was determined by measuring the diffusion coefficient for Neurobiotin (Mills & Massey, 1998). MFA, 18-beta-GA, 2-APB and mefloquine were the most effective antagonists, completely eliminating A-type horizontal cell coupling at a concentration of 200 muM. Niflumic acid, flufenamic acid, and carbenoxolone were less potent. Additionally, carbenoxolone was difficult to wash out and also may be harmful, as the retina became opaque and swollen. MFA, 18-beta-GA, 2-APB and mefloquine also blocked coupling in B-type horizontal cells and AII amacrine cells. Because these cell types express different connexins, this suggests that the antagonists were relatively non-selective across several different types of gap junction. It should be emphasized that MFA was water-soluble and its effects on dye coupling were easily reversible. In contrast, the other gap junction antagonists, except carbenoxolone, required DMSO to make stock solutions and were difficult to wash out of the preparation at the doses required to block coupling in A-type HCs. The combination of potency, water solubility and reversibility suggest that MFA may be a useful compound to manipulate gap junction coupling.</p>

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</description>

<author>Feng Pan et al.</author>


<category>Algorithms</category>

<category>Animals</category>

<category>Biotin</category>

<category>Boron Compounds</category>

<category>Coloring Agents</category>

<category>Cyclooxygenase Inhibitors</category>

<category>Diffusion</category>

<category>Drug Evaluation, Preclinical</category>

<category>Female</category>

<category>Gap Junctions</category>

<category>Glycyrrhetinic Acid</category>

<category>Immunohistochemistry</category>

<category>Male</category>

<category>Meclofenamic Acid</category>

<category>Mefloquine</category>

<category>Microscopy, Confocal</category>

<category>Nerve Net</category>

<category>Rabbits</category>

<category>Retina</category>

</item>






<item>
<title>Neural reprogramming in retinal degeneration.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/365</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/365</guid>
<pubDate>Fri, 24 Jun 2011 15:32:34 PDT</pubDate>
<description>
	<![CDATA[
	<p>PURPOSE: Early visual defects in degenerative diseases such as retinitis pigmentosa (RP) may arise from phased remodeling of the neural retina. The authors sought to explore the functional expression of ionotropic (iGluR) and group 3, type 6 metabotropic (mGluR6) glutamate receptors in late-stage photoreceptor degeneration.</p>
<p>METHODS: Excitation mapping with organic cations and computational molecular phenotyping were used to determine whether retinal neurons displayed functional glutamate receptor signaling in rodent models of retinal degeneration and a sample of human RP.</p>
<p>RESULTS: After photoreceptor loss in rodent models of RP, bipolar cells lose mGluR6 and iGluR glutamate-activated currents, whereas amacrine and ganglion cells retain iGluR-mediated responsivity. Paradoxically, amacrine and ganglion cells show spontaneous iGluR signals in vivo even though bipolar cells lack glutamate-coupled depolarization mechanisms. Cone survival can rescue iGluR expression by OFF bipolar cells. In a case of human RP with cone sparing, iGluR signaling appeared intact, but the number of bipolar cells expressing functional iGluRs was double that of normal retina.</p>
<p>CONCLUSIONS: RP triggers permanent loss of bipolar cell glutamate receptor expression, though spontaneous iGluR-mediated signaling by amacrine and ganglion cells implies that such truncated bipolar cells still release glutamate in response to some nonglutamatergic depolarization. Focal cone-sparing can preserve iGluR display by nearby bipolar cells, which may facilitate late RP photoreceptor transplantation attempts. An instance of human RP provides evidence that rod bipolar cell dendrite switching likely triggers new gene expression patterns and may impair cone pathway function.</p>

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</description>

<author>Robert E Marc et al.</author>


<category>Agmatine</category>

<category>Amacrine Cells</category>

<category>Animals</category>

<category>Disease Models, Animal</category>

<category>Female</category>

<category>Humans</category>

<category>Male</category>

<category>Mice</category>

<category>Mice, Inbred C3H</category>

<category>Mice, Inbred C57BL</category>

<category>Mice, Mutant Strains</category>

<category>Neuronal Plasticity</category>

<category>Papio anubis</category>

<category>Phenotype</category>

<category>Receptors, AMPA</category>

<category>Receptors, Metabotropic Glutamate</category>

<category>Retinal Bipolar Cells</category>

<category>Retinal Cone Photoreceptor Cells</category>

<category>Retinal Degeneration</category>

<category>Retinal Ganglion Cells</category>

<category>Retinal Rod Photoreceptor Cells</category>

</item>






<item>
<title>Illusory predictors: Generalizability of findings in cocaine treatment retention research.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/364</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/364</guid>
<pubDate>Fri, 24 Jun 2011 15:32:29 PDT</pubDate>
<description>
	<![CDATA[
	<p>Treatment retention is of paramount importance in cocaine treatment research as treatment completion rates are often 50% or less. Failure to retain cocaine patients in treatment has both significant research and clinical implications. In this paper we qualitatively and quantitatively demonstrate the inconsistency found across analyses of retention predictors in order to highlight the problem. First, a qualitative review of the published literature was undertaken to identify the frequency of predictors studied and their relations to treatment retention. Second, an empirical demonstration of predictor stability was conducted by testing a common set of variables across three similar 12-week cocaine clinical trials conducted by the same investigators in the same research clinic within a five-year period. Results of the literature review indicated inconsistently selected variables of convenience, widely varying statistical procedures, and discrepant findings of significance. Further, quantitative analyses resulted in discrepancies in variables identified as significant predictors of retention among the three studies. Potential sources of heterogeneity affecting the consistency of findings across studies and recommendations to improve the validity and generalizability of predictor findings in future studies are proposed.</p>

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</description>

<author>Angela L Stotts et al.</author>


<category>Adult</category>

<category>Clinical Trials as Topic</category>

<category>Cocaine-Related Disorders</category>

<category>Female</category>

<category>Humans</category>

<category>Male</category>

<category>Patient Compliance</category>

<category>Research Design</category>

</item>






<item>
<title>Severe aortic and arterial aneurysms associated with a TGFBR2 mutation.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/363</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/363</guid>
<pubDate>Fri, 24 Jun 2011 15:32:25 PDT</pubDate>
<description>
	<![CDATA[
	<p>BACKGROUND: A 24-year-old man presented with previously diagnosed Marfan's syndrome. Since the age of 9 years, he had undergone eight cardiovascular procedures to treat rapidly progressive aneurysms, dissection and tortuous vascular disease involving the aortic root and arch, the thoracoabdominal aorta, and brachiocephalic, vertebral, internal thoracic and superior mesenteric arteries. Throughout this extensive series of cardiovascular surgical repairs, he recovered without stroke, paraplegia or renal impairment.</p>
<p>INVESTIGATIONS: CT scans, arteriogram, genetic mutation screening of transforming growth factor beta receptors 1 and 2.</p>
<p>DIAGNOSIS: Diffuse and rapidly progressing vascular disease in a patient who met the diagnostic criteria for Marfan's syndrome, but was later rediagnosed with Loeys-Dietz syndrome. Genetic testing also revealed a de novo mutation in transforming growth factor beta receptor 2.</p>
<p>MANAGEMENT: Regular cardiovascular surveillance for aneurysms and dissections, and aggressive surgical treatment of vascular disease.</p>

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</description>

<author>Scott A LeMaire et al.</author>


<category>Adult</category>

<category>Aneurysm</category>

<category>Angiography</category>

<category>Aortic Aneurysm, Abdominal</category>

<category>Aortic Aneurysm, Thoracic</category>

<category>Brachiocephalic Trunk</category>

<category>DNA</category>

<category>Diagnosis, Differential</category>

<category>Humans</category>

<category>Male</category>

<category>Mammary Arteries</category>

<category>Mesenteric Artery, Superior</category>

<category>Mutation</category>

<category>Protein-Serine-Threonine Kinases</category>

<category>Receptors, Transforming Growth Factor beta</category>

<category>Sequence Analysis, DNA</category>

<category>Vertebral Artery</category>

</item>






<item>
<title>Does time really slow down during a frightening event?</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/362</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/362</guid>
<pubDate>Fri, 24 Jun 2011 15:32:21 PDT</pubDate>
<description>
	<![CDATA[
	<p>Observers commonly report that time seems to have moved in slow motion during a life-threatening event. It is unknown whether this is a function of increased time resolution during the event, or instead an illusion of remembering an emotionally salient event. Using a hand-held device to measure speed of visual perception, participants experienced free fall for 31 m before landing safely in a net. We found no evidence of increased temporal resolution, in apparent conflict with the fact that participants retrospectively estimated their own fall to last 36% longer than others' falls. The duration dilation during a frightening event, and the lack of concomitant increase in temporal resolution, indicate that subjective time is not a single entity that speeds or slows, but instead is composed of separable subcomponents. Our findings suggest that time-slowing is a function of recollection, not perception: a richer encoding of memory may cause a salient event to appear, retrospectively, as though it lasted longer.</p>

	]]>
</description>

<author>Chess Stetson et al.</author>


<category>Fear</category>

<category>Humans</category>

<category>Retrospective Studies</category>

<category>Time Factors</category>

</item>






<item>
<title>The relationship between the field-shifting phenomenon and representational coherence of place cells in CA1 and CA3 in a cue-altered environment.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/361</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/361</guid>
<pubDate>Fri, 24 Jun 2011 15:32:17 PDT</pubDate>
<description>
	<![CDATA[
	<p>Subfields of the hippocampus display differential dynamics in processing a spatial environment, especially when changes are introduced to the environment. Specifically, when familiar cues in the environment are spatially rearranged, place cells in the CA3 subfield tend to rotate with a particular set of cues (e.g., proximal cues), maintaining a coherent spatial representation. Place cells in CA1, in contrast, display discordant behaviors (e.g., rotating with different sets of cues or remapping) in the same condition. In addition, on average, CA3 place cells shift their firing locations (measured by the center of mass, or COM) backward over time when the animal encounters the changed environment for the first time, but not after that first experience. However, CA1 displays an opposite pattern, in which place cells exhibit the backward COM-shift only from the second day of experience, but not on the first day. Here, we examined the relationship between the environment-representing behavior (i.e., rotation vs. remapping) and the COM-shift of place fields in CA1 and CA3. Both in CA1 and CA3, the backward (as well as forward) COM-shift phenomena occurred regardless of the rotating versus remapping of the place cell. The differential, daily time course of the onset/offset of backward COM-shift in the cue-altered environment in CA1 and CA3 (on day 1 in CA1 and from day 2 onward in CA3) stems from different population dynamics between the subfields. The results suggest that heterogeneous, complex plasticity mechanisms underlie the environment-representating behavior (i.e., rotate/remap) and the COM-shifting behavior of the place cell.</p>

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</description>

<author>Inah Lee et al.</author>


<category>Animals</category>

<category>Brain Mapping</category>

<category>Conditioning (Psychology)</category>

<category>Electrodes, Implanted</category>

<category>Environment</category>

<category>Hippocampus</category>

<category>Male</category>

<category>Memory</category>

<category>Photic Stimulation</category>

<category>Rats</category>

<category>Rats, Long-Evans</category>

<category>Space Perception</category>

</item>






<item>
<title>Computational identification and functional validation of regulatory motifs in cartilage-expressed genes.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/360</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/360</guid>
<pubDate>Fri, 24 Jun 2011 15:32:13 PDT</pubDate>
<description>
	<![CDATA[
	<p>Chondrocyte gene regulation is important for the generation and maintenance of cartilage tissues. Several regulatory factors have been identified that play a role in chondrogenesis, including the positive transacting factors of the SOX family such as SOX9, SOX5, and SOX6, as well as negative transacting factors such as C/EBP and delta EF1. However, a complete understanding of the intricate regulatory network that governs the tissue-specific expression of cartilage genes is not yet available. We have taken a computational approach to identify cis-regulatory, transcription factor (TF) binding motifs in a set of cartilage characteristic genes to better define the transcriptional regulatory networks that regulate chondrogenesis. Our computational methods have identified several TFs, whose binding profiles are available in the TRANSFAC database, as important to chondrogenesis. In addition, a cartilage-specific SOX-binding profile was constructed and used to identify both known, and novel, functional paired SOX-binding motifs in chondrocyte genes. Using DNA pattern-recognition algorithms, we have also identified cis-regulatory elements for unknown TFs. We have validated our computational predictions through mutational analyses in cell transfection experiments. One novel regulatory motif, N1, found at high frequency in the COL2A1 promoter, was found to bind to chondrocyte nuclear proteins. Mutational analyses suggest that this motif binds a repressive factor that regulates basal levels of the COL2A1 promoter.</p>

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</description>

<author>Sherri R Davies et al.</author>


<category>Animals</category>

<category>Base Sequence</category>

<category>Binding Sites</category>

<category>Cartilage</category>

<category>Chondrocytes</category>

<category>Chondrogenesis</category>

<category>Collagen Type II</category>

<category>DNA</category>

<category>DNA Mutational Analysis</category>

<category>Gene Expression Regulation, Developmental</category>

<category>High Mobility Group Proteins</category>

<category>Humans</category>

<category>Mice</category>

<category>Molecular Sequence Data</category>

<category>Promoter Regions, Genetic</category>

<category>Transcription Factors</category>

</item>






<item>
<title>Versatile applications of transcriptional pulsing to study mRNA turnover in mammalian cells.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/359</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/359</guid>
<pubDate>Fri, 24 Jun 2011 15:32:09 PDT</pubDate>
<description>
	<![CDATA[
	<p>Development of transcriptional pulsing approaches using the c-fos and Tet-off promoter systems greatly facilitated studies of mRNA turnover in mammalian cells. However, optimal protocols for these approaches vary for different cell types and/or physiological conditions, limiting their widespread application. In this study, we have further optimized transcriptional pulsing systems for different cell lines and developed new protocols to facilitate investigation of various aspects of mRNA turnover. We apply the Tet-off transcriptional pulsing strategy to investigate ARE-mediated mRNA decay in human erythroleukemic K562 cells arrested at various phases of the cell cycle by pharmacological inhibitors. This application facilitates studies of the role of mRNA stability in control of cell-cycle dependent gene expression. To advance the investigation of factors involved in mRNA turnover and its regulation, we have also incorporated recently developed transfection and siRNA reagents into the transcriptional pulsing approach. Using these protocols, siRNA and DNA plasmids can be effectively cotransfected into mouse NIH3T3 cells to obtain high knockdown efficiency. Moreover, we have established a tTA-harboring stable line using human bronchial epithelial BEAS-2B cells and applied the transcriptional pulsing approach to monitor mRNA deadenylation and decay kinetics in this cell system. This broadens the application of the transcriptional pulsing system to investigate the regulation of mRNA turnover related to allergic inflammation. Critical factors that need to be considered when employing these approaches are characterized and discussed.</p>

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</description>

<author>Chyi-Ying A Chen et al.</author>


<category>Cell Cycle</category>

<category>Cell Line</category>

<category>Cell Line, Tumor</category>

<category>Humans</category>

<category>Kinetics</category>

<category>Promoter Regions, Genetic</category>

<category>Proto-Oncogene Proteins c-fos</category>

<category>RNA Stability</category>

<category>RNA, Messenger</category>

<category>RNA, Small Interfering</category>

<category>Transcription, Genetic</category>

<category>Transfection</category>

</item>






<item>
<title>Human TOB, an antiproliferative transcription factor, is a poly(A)-binding protein-dependent positive regulator of cytoplasmic mRNA deadenylation.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/358</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/358</guid>
<pubDate>Fri, 24 Jun 2011 15:32:04 PDT</pubDate>
<description>
	<![CDATA[
	<p>In mammalian cells, mRNA decay begins with deadenylation, which involves two consecutive phases mediated by the PAN2-PAN3 and the CCR4-CAF1 complexes, respectively. The regulation of the critical deadenylation step and its relationship with RNA-processing bodies (P-bodies), which are thought to be a site where poly(A)-shortened mRNAs get degraded, are poorly understood. Using the Tet-Off transcriptional pulsing approach to investigate mRNA decay in mouse NIH 3T3 fibroblasts, we found that TOB, an antiproliferative transcription factor, enhances mRNA deadenylation in vivo. Results from glutathione S-transferase pull-down and coimmunoprecipitation experiments indicate that TOB can simultaneously interact with the poly(A) nuclease complex CCR4-CAF1 and the cytoplasmic poly(A)-binding protein, PABPC1. Combining these findings with those from mutagenesis studies, we further identified the protein motifs on TOB and PABPC1 that are necessary for their interaction and found that interaction with PABPC1 is necessary for TOB's deadenylation-enhancing effect. Moreover, our immunofluorescence microscopy results revealed that TOB colocalizes with P-bodies, suggesting a role of TOB in linking deadenylation to the P-bodies. Our findings reveal a new mechanism by which the fate of mammalian mRNA is modulated at the deadenylation step by a protein that recruits poly(A) nuclease(s) to the 3' poly(A) tail-PABP complex.</p>

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</description>

<author>Nader Ezzeddine et al.</author>


<category>Animals</category>

<category>COS Cells</category>

<category>Cercopithecus aethiops</category>

<category>Exoribonucleases</category>

<category>Humans</category>

<category>Intracellular Signaling Peptides and Proteins</category>

<category>Mice</category>

<category>Multiprotein Complexes</category>

<category>NIH 3T3 Cells</category>

<category>Phenylalanine</category>

<category>Poly(A)-Binding Protein I</category>

<category>Polyadenylation</category>

<category>Protein Structure, Tertiary</category>

<category>RNA Stability</category>

<category>RNA, Messenger</category>

<category>RNA, Small Interfering</category>

<category>Recombinant Fusion Proteins</category>

<category>Transcription Factors</category>

<category>Tumor Suppressor Proteins</category>

</item>






<item>
<title>Western diet, but not high fat diet, causes derangements of fatty acid metabolism and contractile dysfunction in the heart of Wistar rats.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/357</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/357</guid>
<pubDate>Fri, 24 Jun 2011 15:32:00 PDT</pubDate>
<description>
	<![CDATA[
	<p>Obesity and diabetes are associated with increased fatty acid availability in excess of muscle fatty acid oxidation capacity. This mismatch is implicated in the pathogenesis of cardiac contractile dysfunction and also in the development of skeletal-muscle insulin resistance. We tested the hypothesis that 'Western' and high fat diets differentially cause maladaptation of cardiac- and skeletal-muscle fatty acid oxidation, resulting in cardiac contractile dysfunction. Wistar rats were fed on low fat, 'Western' or high fat (10, 45 or 60% calories from fat respectively) diet for acute (1 day to 1 week), short (4-8 weeks), intermediate (16-24 weeks) or long (32-48 weeks) term. Oleate oxidation in heart muscle ex vivo increased with high fat diet at all time points investigated. In contrast, cardiac oleate oxidation increased with Western diet in the acute, short and intermediate term, but not in the long term. Consistent with fatty acid oxidation maladaptation, cardiac power decreased with long-term Western diet only. In contrast, soleus muscle oleate oxidation (ex vivo) increased only in the acute and short term with either Western or high fat feeding. Fatty acid-responsive genes, including PDHK4 (pyruvate dehydrogenase kinase 4) and CTE1 (cytosolic thioesterase 1), increased in heart and soleus muscle to a greater extent with feeding a high fat diet compared with a Western diet. In conclusion, we implicate inadequate induction of a cassette of fatty acid-responsive genes, and impaired activation of fatty acid oxidation, in the development of cardiac dysfunction with Western diet.</p>

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</description>

<author>Christopher R Wilson et al.</author>


<category>Animals</category>

<category>Diet</category>

<category>Dietary Fats</category>

<category>Fatty Acids</category>

<category>Insulin</category>

<category>Lipid Metabolism</category>

<category>Male</category>

<category>Muscle, Skeletal</category>

<category>Myocardial Contraction</category>

<category>Myocardium</category>

<category>Rats</category>

<category>Rats, Wistar</category>

<category>Triglycerides</category>

</item>






<item>
<title>Nuclear localization of HBD-1 in human keratinocytes.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/356</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/356</guid>
<pubDate>Fri, 24 Jun 2011 15:31:55 PDT</pubDate>
<description>
	<![CDATA[
	<p>OBJECTIVE: Human defensins and cathelicidins are a family of cationic antimicrobial peptides (AMPs), which play multiple roles in both innate and adaptive immune systems. They have direct antimicrobial activity against several microorganisms including burn pathogens. The majority of components of innate and adaptive immunity either express naturally occurring defensins or are otherwise chemoattracted or functionally affected by them. They also enhance adaptive immunity and wound healing and alter antibody production. All mechanisms to explain multiple functions of AMPs are not clearly understood. Prior studies to localize defensins in normal and burned skin using deconvolution fluorescence scanning microscopy indicate localization of defensins in the nucleus, perinuclear regions, and cytoplasm. The objective of this study is to further confirm the identification of HBD-1 in the nucleus by deconvolution microscopic studies involving image reconstruction and wire frame modeling.</p>
<p>RESULTS: Our study demonstrated the presence of intranuclear HBD-1 in keratinocytes throughout the stratum spinosum by costaining with the nuclear probe DAPI. In addition, HBD-1 sequence does show some homology with known cationic nuclear localization signal sequences.</p>
<p>CONCLUSION: To our knowledge, this is the first report to localize HBD-1 in the nuclear region, suggesting a role for this peptide in gene expression and providing new data that may help determine mechanisms of defensin functions.</p>

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</description>

<author>Roger J Bick et al.</author>


</item>






<item>
<title>Short-Term Plasticity in a Computational Model of the Tail-Withdrawal Circuit in Aplysia.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/355</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/355</guid>
<pubDate>Fri, 24 Jun 2011 15:31:51 PDT</pubDate>
<description>
	<![CDATA[
	<p>The tail-withdrawal circuit of Aplysia provides a useful model system for investigating synaptic dynamics. Sensory neurons within the circuit manifest several forms of synaptic plasticity. Here, we developed a model of the circuit and investigated the ways in which depression (DEP) and potentiation (POT) contributed to information processing. DEP limited the amount of motor neuron activity that could be elicited by the monosynaptic pathway alone. POT within the monosynaptic pathway did not compensate for DEP. There was, however, a synergistic interaction between POT and the polysynaptic pathway. This synergism extended the dynamic range of the network, and the interplay between DEP and POT made the circuit responded preferentially to long-duration, low-frequency inputs.</p>

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</description>

<author>Douglas A Baxter et al.</author>


</item>






<item>
<title>Agrobacterium ParA/MinD-like VirC1 spatially coordinates early conjugative DNA transfer reactions.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/354</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/354</guid>
<pubDate>Fri, 24 Jun 2011 15:31:47 PDT</pubDate>
<description>
	<![CDATA[
	<p>Agrobacterium tumefaciens translocates T-DNA through a polar VirB/D4 type IV secretion (T4S) system. VirC1, a factor required for efficient T-DNA transfer, bears a deviant Walker A and other sequence motifs characteristic of ParA and MinD ATPases. Here, we show that VirC1 promotes conjugative T-DNA transfer by stimulating generation of multiple copies per cell of the T-DNA substrate (T-complex) through pairwise interactions with the processing factors VirD2 relaxase, VirC2, and VirD1. VirC1 also associates with the polar membrane and recruits T-complexes to cell poles, the site of VirB/D4 T4S machine assembly. VirC1 Walker A mutations abrogate T-complex generation and polar recruitment, whereas the native protein recruits T-complexes to cell poles independently of other polar processing factors (VirC2, VirD1) or T4S components (VirD4 substrate receptor, VirB channel subunits). We propose that A. tumefaciens has appropriated a progenitor ParA/MinD-like ATPase to promote conjugative DNA transfer by: (i) nucleating relaxosome assembly at oriT-like T-DNA border sequences and (ii) spatially positioning the transfer intermediate at the cell pole to coordinate substrate-T4S channel docking.</p>

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</description>

<author>Krishnamohan Atmakuri et al.</author>


<category>Adenosine Triphosphatases</category>

<category>Amino Acid Motifs</category>

<category>Amino Acid Sequence</category>

<category>Conjugation, Genetic</category>

<category>DNA, Bacterial</category>

<category>Escherichia coli</category>

<category>Glutathione Transferase</category>

<category>In Situ Hybridization, Fluorescence</category>

<category>Plasmids</category>

<category>Recombinant Proteins</category>

<category>Rhizobium radiobacter</category>

<category>Virulence Factors</category>

</item>






<item>
<title>A model of late long-term potentiation simulates aspects of memory maintenance.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/353</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/353</guid>
<pubDate>Fri, 24 Jun 2011 15:31:43 PDT</pubDate>
<description>
	<![CDATA[
	<p>Late long-term potentiation (L-LTP) denotes long-lasting strengthening of synapses between neurons. L-LTP appears essential for the formation of long-term memory, with memories at least partly encoded by patterns of strengthened synapses. How memories are preserved for months or years, despite molecular turnover, is not well understood. Ongoing recurrent neuronal activity, during memory recall or during sleep, has been hypothesized to preferentially potentiate strong synapses, preserving memories. This hypothesis has not been evaluated in the context of a mathematical model representing ongoing activity and biochemical pathways important for L-LTP. In this study, ongoing activity was incorporated into two such models - a reduced model that represents some of the essential biochemical processes, and a more detailed published model. The reduced model represents synaptic tagging and gene induction simply and intuitively, and the detailed model adds activation of essential kinases by Ca(2+). Ongoing activity was modeled as continual brief elevations of Ca(2+). In each model, two stable states of synaptic strength/weight resulted. Positive feedback between synaptic weight and the amplitude of ongoing Ca(2+) transients underlies this bistability. A tetanic or theta-burst stimulus switches a model synapse from a low basal weight to a high weight that is stabilized by ongoing activity. Bistability was robust to parameter variations in both models. Simulations illustrated that prolonged periods of decreased activity reset synaptic strengths to low values, suggesting a plausible forgetting mechanism. However, episodic activity with shorter inactive intervals maintained strong synapses. Both models support experimental predictions. Tests of these predictions are expected to further understanding of how neuronal activity is coupled to maintenance of synaptic strength. Further investigations that examine the dynamics of activity and synaptic maintenance can be expected to help in understanding how memories are preserved for up to a lifetime in animals including humans.</p>

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</description>

<author>Paul Smolen</author>


<category>Calcium</category>

<category>Electric Stimulation</category>

<category>Humans</category>

<category>Long-Term Potentiation</category>

<category>Memory</category>

<category>Synapses</category>

</item>






<item>
<title>Time-kill and synergism studies of ceftobiprole against Enterococcus faecalis, including beta-lactamase-producing and vancomycin-resistant isolates.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/352</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/352</guid>
<pubDate>Fri, 24 Jun 2011 15:31:38 PDT</pubDate>
<description>
	<![CDATA[
	<p>Ceftobiprole (BAL9141) is an investigational cephalosporin with broad in vitro activity against gram-positive cocci, including enterococci. Ceftobiprole MICs were determined for 93 isolates of Enterococcus faecalis (including 16 beta-lactamase [Bla] producers and 17 vancomycin-resistant isolates) by an agar dilution method following the Clinical and Laboratory Standards Institute recommendations. Ceftobiprole MICs were also determined with a high inoculum concentration (10(7) CFU/ml) for a subset of five Bla producers belonging to different previously characterized clones by a broth dilution method. Time-kill and synergism studies (with either streptomycin or gentamicin) were performed with two beta-lactamase-producing isolates (TX0630 and TX5070) and two vancomycin-resistant isolates (TX2484 [VanB] and TX2784 [VanA]). The MICs of ceftobiprole for 50 and 90% of the isolates tested were 0.25 and 1 microg/ml, respectively. All Bla producers and vancomycin-resistant isolates were inhibited by concentrations of</p>

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</description>

<author>Cesar A Arias et al.</author>


<category>Anti-Bacterial Agents</category>

<category>Cephalosporins</category>

<category>Drug Synergism</category>

<category>Enterococcus faecalis</category>

<category>Gentamicins</category>

<category>Gram-Positive Bacterial Infections</category>

<category>Humans</category>

<category>Microbial Sensitivity Tests</category>

<category>Streptomycin</category>

<category>Vancomycin Resistance</category>

<category>beta-Lactamases</category>

</item>






<item>
<title>Radiation injury is a potentially serious complication to fluoroscopically-guided complex interventions.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/351</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/351</guid>
<pubDate>Fri, 24 Jun 2011 15:31:34 PDT</pubDate>
<description>
	<![CDATA[
	<p>Radiation-induced injury to skin is an infrequent but potentially serious complication to complex fluoroscopically-guided interventional procedures. Due to a lack of experience with such injuries, the medical community has found fluoroscopically-induced injuries difficult to diagnose. Injuries have occurred globally in many countries. Serious injuries most frequently occur on the back but have also occurred on the neck, buttocks and anterior of the chest. Severities of injuries range from skin rashes and epilation to necrosis of the skin and its underlying structures. This article reviews the characteristics of these injuries and some actions that can be taken to reduce their likelihood or seriousness.</p>

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</description>

<author>Lk Wagner</author>


</item>






<item>
<title>Ambulatory care adverse events and preventable adverse events leading to a hospital admission.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/350</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/350</guid>
<pubDate>Fri, 24 Jun 2011 15:31:30 PDT</pubDate>
<description>
	<![CDATA[
	<p>BACKGROUND: Most healthcare in the US is delivered in the ambulatory care setting, but the epidemiology of errors and adverse events in ambulatory care is understudied.</p>
<p>METHODS: Using the population-based data from the Colorado and Utah Medical Practices Study, we identified adverse events that occurred in an ambulatory care setting and led to hospital admission. Proportions with 95% CIs are reported.</p>
<p>RESULTS: We reviewed 14,700-hospital discharge records and found 587 adverse events of which 70 were ambulatory care adverse events (AAEs) and 31 were ambulatory care preventable adverse events (APAEs). When weighted to the general population, there were 2608 AAEs and 1296 (44.3%) APAEs in Colorado and Utah, USA, in 1992. APAEs occurred most commonly in physicians' offices (43.1%, range 46.8-27.8), the emergency department (32.3%, 46.1-18.5) and at home (13.1%, 23.1-3.1). APAEs in day surgery were less common (7.1%, 13.6-0.6) but caused the greatest harm to patients. The types of APAEs were broadly distributed among missed or delayed diagnoses (36%, 50.2-21.8), surgery (24.1%, 36.7-11.5), non-surgical procedures (14.6%, 25.0-4.2), medication (13.1%, 23.1-3.1) and therapeutic events (12.3%, 22.0-2.6). Overall, 10% of the APAEs resulted in serious permanent injury or death. The proportion of APAEs that resulted in death was 31.8% for general internal medicine, 22.5% for family practice and 16.7% for emergency medicine.</p>
<p>CONCLUSION: An estimated 75,000 hospitalisations per year are due to preventable adverse events that occur in outpatient settings in the US, resulting in 4839 serious permanent injuries and 2587 deaths.</p>

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</description>

<author>Donna M Woods et al.</author>


<category>Adolescent</category>

<category>Adult</category>

<category>Age Factors</category>

<category>Aged</category>

<category>Ambulatory Care</category>

<category>Child</category>

<category>Child, Preschool</category>

<category>Colorado</category>

<category>Female</category>

<category>Hospitalization</category>

<category>Humans</category>

<category>Iatrogenic Disease</category>

<category>Infant</category>

<category>Infant, Newborn</category>

<category>Male</category>

<category>Medical Errors</category>

<category>Middle Aged</category>

<category>Risk Factors</category>

<category>Utah</category>

</item>






<item>
<title>Dietary factors in the modulation of inflammatory bowel disease activity.</title>
<link>http://digitalcommons.library.tmc.edu/uthmed_docs/349</link>
<guid isPermaLink="true">http://digitalcommons.library.tmc.edu/uthmed_docs/349</guid>
<pubDate>Fri, 24 Jun 2011 15:31:27 PDT</pubDate>
<description>
	<![CDATA[
	<p>CONTEXT: As patients look to complementary therapies for management of their diseases, it is important that the physician know the effectiveness and/or lack of effectiveness of a variety of dietary approaches/interventions. Although the pathogenesis of the inflammatory bowel diseases (ulcerative colitis and Crohn's disease) is not fully understood, many suspect that diet and various dietary factors may play a modulating role in the disease process.</p>
<p>EVIDENCE ACQUISITION: The purpose of this article is to present some of what is known about various dietary/nutritional factors in inflammatory bowel disease, with inclusion of evidence from various studies regarding their putative effect. MedLINE was searched (1965-present) using combinations of the following search terms: diet, inflammatory bowel disease, Crohn's disease, and ulcerative colitis. Additionally, references of the articles obtained were searched to identify further potential sources of information.</p>
<p>EVIDENCE SYNTHESIS: While much information is available regarding various dietary interventions/supplements in regard to inflammatory bowel disease, the lack of controlled trials limits broad applicability. Probiotics are one of the few interventions with promising results and controlled trials.</p>
<p>CONCLUSION: While there are many potential and promising dietary factors that may play a role in the modulation of inflammatory bowel disease, it is prudent to await further controlled studies before broad application/physician recommendation in the noted patient population.</p>

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</description>

<author>Shinil Shah</author>


<category>Complementary Therapies</category>

<category>Dietary Fats</category>

<category>Humans</category>

<category>Inflammatory Bowel Diseases</category>

<category>Probiotics</category>

</item>





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