Faculty, Staff and Student Publications
Publication Date
1-6-2025
Journal
Nucleic Acids Research
Abstract
Circadian rhythms, which are the natural cycles that dictate various physiological processes over a 24-h period, have been increasingly recognized as important in the management and treatment of various human diseases. However, the lack of sufficient data and reliable analysis methods have been a major obstacle to understanding the bidirectional interaction between circadian variation and human health. We have developed CircaKB, a comprehensive knowledgebase of circadian genes across multiple species. CircaKB is the first knowledgebase that provides systematic annotations of the oscillatory patterns of gene expression at a genome-wide level for 15 representative species. Currently, CircaKB contains 226 time-course transcriptome datasets, covering a wide variety of tissues, organs, and cell lines. In addition, CircaKB integrates 12 computational models to facilitate reliable data analysis and identify oscillatory patterns and their variations in gene expression. CircaKB also offers powerful functionalities to its users, including easy search, fast browsing, strong visualization, and custom upload. We believe that CircaKB will be a valuable tool and resource for the circadian research community, contributing to the identification of new targets for disease prevention and treatment. We have made CircaKB freely accessible at https://cdsic.njau.edu.cn/CircaKB.
Keywords
Humans, Circadian Rhythm, Knowledge Bases, Animals, Databases, Genetic, Transcriptome, Software, Gene Expression Profiling, Mice
DOI
10.1093/nar/gkae817
PMID
39329269
PMCID
PMC11701547
PubMedCentral® Posted Date
9-26-2024
PubMedCentral® Full Text Version
Post-print
Published Open-Access
yes
Graphical Abstract