Publication Date

1-9-2025

Journal

Nature Communications

DOI

10.1038/s41467-024-55257-z

PMID

39788966

PMCID

PMC11717940

PubMedCentral® Posted Date

1-9-2025

PubMedCentral® Full Text Version

Post-print

Published Open-Access

yes

Keywords

Animals, Auditory Pathways, Cochlear Nucleus, Neurons, Mice, Auditory Perception, Male, Female, Single-Cell Analysis, Auditory system, Cell type diversity, Genetics of the nervous system

Abstract

The cochlear nuclear complex (CN), the starting point for all central auditory processing, encompasses a suite of neuronal cell types highly specialized for neural coding of acoustic signals. However, the molecular logic governing these specializations remains unknown. By combining single-nucleus RNA sequencing and Patch-seq analysis, we reveal a set of transcriptionally distinct cell populations encompassing all previously observed types and discover multiple hitherto unknown subtypes with anatomical and physiological identity. The resulting comprehensive cell-type taxonomy reconciles anatomical position, morphological, physiological, and molecular criteria, enabling the determination of the molecular basis of the specialized cellular phenotypes in the CN. In particular, CN cell-type identity is encoded in a transcriptional architecture that orchestrates functionally congruent expression across a small set of gene families to customize projection patterns, input-output synaptic communication, and biophysical features required for encoding distinct aspects of acoustic signals. This high-resolution account of cellular heterogeneity from the molecular to the circuit level reveals the molecular logic driving cellular specializations, thus enabling the genetic dissection of auditory processing and hearing disorders with a high specificity.

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