Language

English

Publication Date

1-1-2025

Journal

Trends in Pharmacological Sciences

DOI

10.1016/j.tips.2024.11.007

PMID

39732609

PMCID

PMC11786253

PubMedCentral® Posted Date

1-1-2026

PubMedCentral® Full Text Version

Author MSS

Abstract

The human microbiome consists of diverse microorganisms that inhabit various body sites. As these microbes are increasingly recognized as key determinants of health, there is significant interest in leveraging individual microbiome profiles for early disease detection, prevention, and drug efficacy prediction. However, the complexity of microbiome data, coupled with conflicting study outcomes, has hindered its integration into clinical practice. This challenge is partially due to demographic and technological biases that impede the development of reliable disease classifiers. Here, we examine recent advances in 16S rRNA and shotgun-metagenomics sequencing, along with bioinformatics tools designed to enhance microbiome data integration for precision diagnostics and personalized treatments. We also highlight progress in microbiome-based therapies and address the challenges of establishing causality to ensure robust diagnostics and effective treatments for complex diseases.

Keywords

Animals, Humans, Computational Biology, Metagenomics, Microbiota, Precision Medicine, RNA, Ribosomal, 16S, Microbiome, clinical metagenomics, pan-microbiome profiling, C. difficile infection, inflammatory bowel disease, irritable bowel syndrome

Published Open-Access

yes

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