Language

English

Publication Date

4-7-2026

Journal

Communications Biology

DOI

10.1038/s42003-026-09969-1

PMID

41946819

PMCID

PMC13233964

PubMedCentral® Posted Date

4-7-2026

PubMedCentral® Full Text Version

Post-print

Abstract

β-Lactamases confer bacterial resistance by hydrolyzing β-lactam antibiotics. Klebsiella pneumoniae carbapenemases (KPCs) are a major cause of resistance to carbapenems, but combinations of β-lactams with β-lactamase inhibitors, such as ceftazidime/avibactam, initially restored activity against these enzymes. However, treatment has driven the emergence of KPC variants that evade inhibition. Here we investigate the evolutionary and mechanistic consequences of three clinically observed substitutions -D179Y, T243M and H274Y- that together convert the broad-spectrum KPC-2 enzyme into a variant specialized for ceftazidime/avibactam resistance. Using steady-state and pre-steady-state kinetic analyses with ceftazidime, cephalothin and imipenem, we show that T243M enhances cephalosporin hydrolysis, whereas H274Y modulates this effect. Introduction of D179Y decreases both kcat and KM and shifts the rate-limiting step of catalysis to deacylation. Together, these mutations act cooperatively, reducing catalytic efficiency while promoting resistance to ceftazidime/avibactam. These findings reveal how epistatic interactions shape the evolution of clinically relevant β-lactamase variants and may help anticipate future resistance trajectories and guide inhibitor design.

Keywords

Ceftazidime, beta-Lactamases, Azabicyclo Compounds, Anti-Bacterial Agents, Klebsiella pneumoniae, Bacterial Proteins, Third Generation Cephalosporins, Drug Combinations, Microbial Sensitivity Tests, Kinetics, Mutation, Antibiotics, Enzyme mechanisms

Published Open-Access

yes

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