Ahp DB: A Reference Database of Proteins in the Human Aqueous Humor

Authors

Tae Jin Lee
Arnav Goyal
Garrett Jones
Joshua Glass
Vishal Doshi
Kathryn Bollinger
Lane Ulrich
Saleh Ahmed
Sai Karthik Kodeboyina
Amy Estes
Marc Töteberg-Harms
Wenbo Zhi
Shruti Sharma
Ashok Sharma

Publication Date

1-29-2024

Journal

Database

Abstract

The aqueous humor (AH) is a low-viscosity biofluid that continuously circulates from the posterior chamber to the anterior chamber of the eye. Recent advances in high-resolution mass-spectrometry workflows have facilitated the study of proteomic content in small-volume biofluids like AH, highlighting the potential clinical implications of the AH proteome. Nevertheless, in-depth investigations into the role of AH proteins in ocular diseases have encountered challenges due to limited accessibility to these workflows, difficulties in large-scale AH sample collection and the absence of a reference AH proteomic database. In response to these obstacles, and to promote further research on the involvement of AH proteins in ocular physiology and pathology, we have developed the web-based Aqueous Humor Proteomics Database (AHP DB). The current version of AHP DB contains proteomic data from 307 human AH samples, which were analyzed using liquid chromatography-tandem mass spectrometry (LC-MS/MS). The database offers comprehensive information on 1683 proteins identified in the AH samples. Furthermore, relevant clinical data are provided for each analyzed sample. Researchers also have the option to download these datasets individually for offline use, rendering it a valuable resource for the scientific community. Database URL: https://ahp.augusta.edu/

Keywords

Humans, Aqueous Humor, Chromatography, Liquid, Proteomics, Tandem Mass Spectrometry, Proteome

Comments

PMID: 38284936