Addressing Controversy in Fusobacterium Nomenclature: What Exactly Does “F nucleatum” Refer To?

Authors

Martha A Zepeda-Rivera
Floyd E Dewhirst
Susan Bullman
Christopher D Johnston

Publication Date

12-1-2025

Journal

Gut Microbes

DOI

10.1080/19490976.2025.2514797

PMID

40464118

PMCID

PMC12143674

PubMedCentral® Posted Date

6-4-2025

PubMedCentral® Full Text Version

Post-print

Abstract

The F. nucleatum group (sensu lato) is historically composed of four subspecies (F. nucleatum subsp. animalis, F. nucleatum subsp. nucleatum, F. nucleatum subsp. polymorphum, F. nucleatum subsp. vincentii). Although F. nucleatum sensu lato members are typically associated with oral disease, they have recently been shown to disseminate to the gastrointestinal tract and are associated with adverse health conditions such as inflammatory bowel disease and colorectal cancer (CRC). A growing debate over the nomenclature applied to Fusobacterium taxonomy has resulted in different names for these lineages, shifting them from their historic subspecies designations to distinct species names (F. animalis, F. nucleatum, F. polymorphum, F. vincentii). This shift in naming scheme can lead to potentially significant confusion as “F. nucleatum” can now refer to both the group (sensu lato) and a distinct lineage (sensu stricto; historically F. nucleatum subsp. nucleatum). For example, the substantial body of literature documenting the involvement of “F. nucleatum” (sensu lato) in CRC is seemingly contradicted by recent analyses showing that “F. nucleatum” (sensu stricto) is not enriched in CRC. However, this apparent contradiction is due only to changes in the updated Fusobacterium naming scheme. Furthermore, discrepancies arising from this nomenclature shift can obscure the crucial role of other lineages in tumor biology, particularly that of F. nucleatum subsp. animalis/F. animalis. Thus, the adoption of this nomenclature reclassification without careful consideration risks misleading non-experts and sparking misinterpretation of scientific literature and discourse. Here we elaborate on the challenges of the updated Fusobacterium nomenclature scheme, propose tentative suggestions to improve accuracy and clarity, and call for a broader research community effort to discuss and implement a unified approach moving forward.

Keywords

Humans, Fusobacterium, Fusobacterium Infections, Fusobacterium nucleatum, Terminology as Topic, Fusobacterium, nomenclature, taxonomy, microbiome profiling, CRC

Published Open-Access

yes

Recommended Citation

Zepeda-Rivera, Martha A; Dewhirst, Floyd E; Bullman, Susan; et al., "Addressing Controversy in Fusobacterium Nomenclature: What Exactly Does “F nucleatum” Refer To?" (2025). Faculty, Staff and Student Publications. 4553.
https://digitalcommons.library.tmc.edu/uthgsbs_docs/4553