Faculty, Staff and Student Publications
Open-access journal articles of faculty, students and staff from McWilliams School of Biomedical Informatics at UTHealth Houston. Some of the focus areas include Clinical and Cognitive Informatics, Biomedical Engineering, Public Health Informatics, and Translational Biomedical Informatics.
Submissions from 2025
Leveraging GPT-4o for Automated Extraction of Neural Projections from Scientific Literature, Rashmie Abeysinghe, Gorbachev Jowah, Licong Cui, et al.
Leveraging Pretrained Language Models for Seizure Frequency Extraction From Epilepsy Evaluation Reports, Rashmie Abeysinghe, Shiqiang Tao, Samden D Lhatoo, et al.
Precision Phenotyping for Curating Research Cohorts of Patients With Unexplained Post-acute Sequelae of COVID-19, Alaleh Azhir, Jonas Hügel, Jiazi Tian, et al.
Education Improves Perceived Control but Not Risk Identification in Adolescents Regarding Fentanyl, Christine Bakos-Block, Francine R Vega, Marylou Cardenas-Turanzas, et al.
Identification of Hypoxia-Inducible Factor HIF1A as a Therapeutic Target During SARS-CoV-2-Associated Lung Injury, Bentley Bobrow, Samuel D Luber, Paul Potnuru, et al.
Computerized Diagnostic Decision Support Systems-Isabel Pro Versus ChatGPT-4 Part II, Joe M Bridges, Xiaoqian Jiang, Michael Ige, et al.
Evaluating the Meditation Practices and Barriers to Adopting Mindful Medicine Among Physicians, Tiffany Champagne-Langabeer, Chelsea G Ratcliff, Christine Bakos-Block, et al.
Classification of Schizophrenia, Bipolar Disorder and Major Depressive Disorder With Comorbid Traits and Deep Learning Algorithms, Xiangning Chen, Yimei Lu, Joan Manuel Cue, et al.
Cross-Institutional Dental Electronic Health Record Entity Extraction via Generative Artificial Intelligence and Synthetic Notes, Yao-Shun Chuang, Chun-Teh Lee, Guo-Hao Lin, et al.
Identification and Catalog of Viral Transcriptional Regulators in Human Diseases, Citu Citu, Le Chang, Astrid M Manuel, et al.
Genetic, Transcriptomic, and Epigenomic Insights into Sjögren's Disease: An Integrative Network Investigation and Immune Diseases Comparison, Nitesh Enduru, Astrid M Manuel, and Zhongming Zhao
MMRT: MultiMut Recursive Tree for Predicting Functional Effects of High-Order Protein Variants From Low-Order Variants, Bryce Forrest, Houssemeddine Derbel, Zhongming Zhao, et al.
Enhanced and Interpretable Prediction of Multiple Cancer Types Using a Stacking Ensemble Approach with SHAP Analysis, Shahid Mohammad Ganie, Pijush Kanti Dutta Pramanik, and Zhongming Zhao
Ensemble Learning With Explainable AI for Improved Heart Disease Prediction Based on Multiple Datasets, Shahid Mohammad Ganie, Pijush Kanti Dutta Pramanik, and Zhongming Zhao
Designing a Narrative-Based Video Game for Adolescents Coping with a Parent's Cancer, Sophia Hamilton, Xubing Hao, Sharon Andrews, et al.
Leveraging SNOMED CT for Patient Cohort Identification Over Heterogeneous EHR Data, Xubing Hao, Yan Huang, Licong Cui, et al.
Federally Qualified Health Center Patients’ Experiences With Remote Patient Monitoring as Part of Telehealth Services for Self-Measured Blood Pressure Monitoring, Natalia I Heredia, Maria E Fernandez, Ella R Garza, et al.
Dissemination and Implementation Approach to Increasing Access to Local Pre-Exposure Prophylaxis (PrEP) Resources With Black Cisgender Women: Intervention Study With Vlogs Shared on Social Media, Mandy J Hill, Laurenia Mangum, Sandra J Coker, et al.
iGTP: Learning Interpretable Cellular Embedding for Inferring Biological Mechanisms Underlying Single-Cell Transcriptomics, Kang-Lin Hsieh, Kai Zhang, Yan Chu, et al.
Leveraging Large Language Models for Knowledge-Free Weak Supervision in Clinical Natural Language Processing, Enshuo Hsu and Kirk Roberts
LLM-IE: A Python Package for Biomedical Generative Information Extraction With Large Language Models, Enshuo Hsu and Kirk Roberts
Exploration of Working Memory Retrieval Stage for Mild Cognitive Impairment: Time-Varying Causality Analysis of Electroencephalogram Based on Dynamic Brain Networks, Yi Jiang, Zhiwei Guo, Xiaobo Zhou, et al.
Optimizing Electrode Configurations for EEG Mild Cognitive Impairment Detection, Yi Jiang, Xin Zhang, Zhiwei Guo, et al.
Social Determinants of Health Extraction From Clinical Notes Across Institutions Using Large Language Models, Vipina K Keloth, Salih Selek, Qingyu Chen, et al.
Deep5mC: Predicting 5-Methylcytosine (5mC) Methylation Status Using a Deep Learning Transformer Approach, Evan Kinnear, Houssemeddine Derbel, Zhongming Zhao, et al.