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Faculty, Staff and Student Publications

Open-access journal articles of faculty, students and staff from McWilliams School of Biomedical Informatics at UTHealth Houston. Some of the focus areas include Clinical and Cognitive Informatics, Biomedical Engineering, Public Health Informatics, and Translational Biomedical Informatics.

Submissions from 2025 2025

Leveraging Large Language Models for Knowledge-Free Weak Supervision in Clinical Natural Language Processing

Leveraging LLMs to Understand Narratives in MAUDE Reports

Lifestyle Data-Based Multiclass Obesity Prediction With Interpretable Ensemble Models Incorporating SHAP and LIME Analysis

LLM-IE: A Python Package for Biomedical Generative Information Extraction With Large Language Models

MMRT: MultiMut Recursive Tree for Predicting Functional Effects of High-Order Protein Variants From Low-Order Variants

Not Fully Synthetic: LLM-based Hybrid Approaches Towards Privacy-Preserving Clinical Note Sharing

Pain Acceptance in Chronic Postoperative Pain: Concept Analysis

Privacy-Preserving Collaborative Population Stratification with Dynamic Algorithm and Hyperparameter Selection

Privacy-Preserving Framework for Genomic Computations via Multi-key Homomorphic Encryption

Proxy Panels Enable Privacy-Aware Outsourcing of Genotype Imputation

Rank Aggregation Methods and Tools in Genomic Data Analysis

Safeguarding Privacy in Genome Research: A Comprehensive Framework for Authors

Scupa: Single-Cell Unified Polarization Assessment of Immune Cells Using the Single-Cell Foundation Model

Session Introduction: Translating Big Data Imaging Genomics Findings to the Individual: Prediction of Risks and Outcomes in Neuropsychiatric Illnesses

Simplified Control of Neuromuscular Stimulation Systems for Restoration of Reach With Limb Stiffness as a Modifiable Degree of Freedom

Single-Cell and Bulk Transcriptome Analysis Identifies B-cell Subpopulations and Associated Cancer Subtypes With Distinct Clinical and Molecular Characteristics

Understanding Utilization and Prevention Measures Associated With a Caries Risk Assessment in Oral Health Transformation

Unveiling Endoscopic Procedures in MAUDE: An ETL-LLM Method

Visualizing Data for Diabetes Management in Patient Portals

The Global Neurodegeneration Proteomics Consortium: Biomarker and Drug Target Discovery for Common Neurodegenerative Diseases and Aging, Gamal Abdel-Azim, Muhammad Ali, Lijun An, et al.

Exploring Multimodal Large Language Models on Transthoracic Echocardiogram (Tte) Tasks for Cardiovascular Decision Support, Ahmed M Abdelhameed, Weiguo Cao, Haifang Li, et al.

Quantitatively Assessing the Impact of the Quality of SNOMED CT Subtype Hierarchy on Cohort Queries, Rashmie Abeysinghe, Cui Tao, Kirk Roberts, et al.

Leveraging Pretrained Language Models for Seizure Frequency Extraction From Epilepsy Evaluation Reports, Rashmie Abeysinghe, Shiqiang Tao, Samden D Lhatoo, et al.

KinaseFusionDB: An Integrative Knowledge of Kinase Fusion Proteins in Multi-scales, Leonardo Aguilar and Pora Kim

Distinct Clinicogenomic Features and Immunotherapy Associations in Pulmonary Sarcomatoid Carcinoma: A Multicenter Retrospective Study, Joao V Alessi, Phoebe Clark, Waree Rinsurongkawong, et al.