Journal Articles
Open-access journal articles from McWilliams School of Biomedical Informatics at UTHealth Houston Faculty. School focus areas include Clinical and Cognitive Informatics, Biomedical Engineering, Public Health Informatics, and Translational Biomedical Informatics.
Submissions from 2023
Application of an Ontology for Model Cards to Generate Computable Artifacts for Linking Machine Learning Information From Biomedical Research, Muhammad Tuan Amith, Licong Cui, Kirk Roberts, and Cui Tao
Medication Reconciliation during Transitions of Care Across Institutions: A Quantitative Analysis of Challenges and Opportunities, Alejandro Araya, Logan R Thornton, Deukwoo Kwon, Gayla M Ferguson, Linda D Highfield, Kevin O Hwang, Holly M Holmes, and Elmer V Bernstam
The Current Status and Future Prospects for Conversion Therapy in the Treatment of Hepatocellular Carcinoma, Jinfeng Bai, Ming Huang, Bohan Song, Wei Luo, and Rong Ding
Population-Based Mini-Mental State Examination Norms in Adults of Mexican Heritage in the Cameron County Hispanic Cohort, Avram S Bukhbinder, Miriam Hinojosa, Kristofer Harris, Xiaojin Li, Christine M Farrell, Madison Shyer, Nathan Goodwin, Sahar Anjum, Omar Hasan, Susan Cooper, Lois Sciba, Amanda Falk Vargas, David H Hunter, Guadalupe J Ortiz, Karen Chung, Licong Cui, Guo-Qiang Zhang, Susan P Fisher-Hoch, Joseph B McCormick, and Paul E Schulz
Genetic Correlations Between Alzheimer’s Disease and Gut Microbiome Genera, Davis Cammann, Yimei Lu, Melika J Cummings, Mark L Zhang, Joan Manuel Cue, Jenifer Do, Jeffrey Ebersole, Xiangning Chen, Edwin C Oh, Jeffrey L Cummings, and Jingchun Chen
Knowledge Representation and Management 2022: Findings in Ontology Development and Applications, Jean Charlet, Licong Cui, and Section Editors for the IMIA Yearbook Section on Knowledge Representation and Management
An Electronic Origin of Charge Order in Infinite-Layer Nickelates., Hanghui Chen, Yi-Feng Yang, Guang-Ming Zhang, and Hongquan Liu
Fimap: A Fast Identity-By-Descent Mapping Test for Biobank-Scale Cohorts, Han Chen, Ardalan Naseri, and Degui Zhi
Targeted Gene Expression Profiling Predicts Meningioma Outcomes and Radiotherapy Responses, William C Chen, Abrar Choudhury, Mark W Youngblood, Mei-Yin C Polley, Calixto-Hope G Lucas, Kanish Mirchia, Sybren L N Maas, Abigail K Suwala, Minhee Won, James C Bayley, Akdes S Harmanci, Arif O Harmanci, Tiemo J Klisch, Minh P Nguyen, Harish N Vasudevan, Kathleen McCortney, Theresa J Yu, Varun Bhave, Tai-Chung Lam, Jenny Kan-Suen Pu, Lai-Fung Li, Gilberto Ka-Kit Leung, Jason W Chan, Haley K Perlow, Joshua D Palmer, Christine Haberler, Anna S Berghoff, Matthias Preusser, Theodore P Nicolaides, Christian Mawrin, Sameer Agnihotri, Adam Resnick, Brian R Rood, Jessica Chew, Jacob S Young, Lauren Boreta, Steve E Braunstein, Jessica Schulte, Nicholas Butowski, Sandro Santagata, David Spetzler, Nancy Ann Oberheim Bush, Javier E Villanueva-Meyer, James P Chandler, David A Solomon, C Leland Rogers, Stephanie L Pugh, Minesh P Mehta, Penny K Sneed, Mitchel S Berger, Craig M Horbinski, Michael W McDermott, Arie Perry, Wenya Linda Bi, Akash J Patel, Felix Sahm, Stephen T Magill, and David R Raleigh
Convolutional Neural Network for Biomarker Discovery for Triple Negative Breast Cancer With RNA Sequencing Data, Xiangning Chen, Justin M Balko, Fei Ling, Yabin Jin, Anneliese Gonzalez, Zhongming Zhao, and Jingchun Chen
Predicting the Risk of Alzheimer's Disease and Related Dementia in Patients with Mild Cognitive Impairment Using a Semi-Competing Risk Approach, Zhaoyi Chen, Yuchen Yang, Dazheng Zhang, Jingchuan Guo, Yi Guo, Xia Hu, Yong Chen, and Jiang Bian
Use GPT-J Prompt Generation with RoBERTa for NER Models on Diagnosis Extraction of Periodontal Diagnosis from Electronic Dental Records, Yao-Shun Chuang, Xiaoqian Jiang, Chun-Teh Lee, Ryan Brandon, Duong Tran, Oluwabunmi Tokede, and Muhammad F Walji
Synthetic Oct-a Blood Vessel Maps Using Fundus Images and Generative Adversarial Networks, Ivan Coronado, Samiksha Pachade, Emanuele Trucco, Rania Abdelkhaleq, Juntao Yan, Sergio Salazar-Marioni, Amanda Jagolino-Cole, Mozhdeh Bahrainian, Roomasa Channa, Sunil A Sheth, and Luca Giancardo
A Scoping Review of Digital Health Interventions for Combating COVID-19 Misinformation and Disinformation, Katarzyna Czerniak, Raji Pillai, Abhi Parmar, Kavita Ramnath, Joseph Krocker, and Sahiti Myneni
Weakly Supervised Spatial Relation Extraction From Radiology Reports, Surabhi Datta and Kirk Roberts
Evolving Availability and Standardization of Patient Attributes for Matching, Yu Deng, Lacey P Gleason, Adam Culbertson, Xiaotian Chen, Elmer V Bernstam, Theresa Cullen, Ramkiran Gouripeddi, Christopher Harle, David F Hesse, Jacob Kean, John Lee, Tanja Magoc, Daniella Meeker, Toan Ong, Jyotishman Pathak, Marc Rosenman, Laura K Rusie, Akash J Shah, Lizheng Shi, Aaron Thomas, William E Trick, Shaun Grannis, and Abel Kho
METTL14 Is a Chromatin Regulator Independent of Its RNA N6-Methyladenosine Methyltransferase Activity, Xiaoyang Dou, Lulu Huang, Yu Xiao, Chang Liu, Yini Li, Xinning Zhang, Lishan Yu, Ran Zhao, Lei Yang, Chuan Chen, Xianbin Yu, Boyang Gao, Meijie Qi, Yawei Gao, Bin Shen, Shuying Sun, Chuan He, and Jun Liu
Global Scientific Trends on Healthy Eating from 2002 to 2021: A Bibliometric and Visualized Analysis, Te Fang, Hongyi Cao, Yue Wang, Yang Gong, and Zhongqing Wang
COVIDanno, COVID-19 Annotation in Human, Yuzhou Feng, Mengyuan Yang, Zhiwei Fan, Weiling Zhao, Pora Kim, and Xiaobo Zhou
Gene Expression in Mice With Endothelium-Specific Telomerase Knockout, Zhanguo Gao, Yongmei Yu, Yulin Dai, Zhongming Zhao, Kristin Eckel-Mahan, and Mikhail G Kolonin
Segmentation of Acute Stroke Infarct Core Using Image-Level Labels on CT-Angiography, Luca Giancardo, Arash Niktabe, Laura Ocasio, Rania Abdelkhaleq, Sergio Salazar-Marioni, and Sunil A Sheth
Integrated mRNA Sequence Optimization Using Deep Learning, Haoran Gong, Jianguo Wen, Ruihan Luo, Yuzhou Feng, JingJing Guo, Hongguang Fu, and Xiaobo Zhou
USP38 Exacerbates Atrial Inflammation, Fibrosis, and Susceptibility to Atrial Fibrillation After Myocardial Infarction in Mice, Yang Gong, Tingting Yu, Wei Shuai, Tao Chen, Jingjing Zhang, and He Huang
Alphaviruses Detected in Mosquitoes in the North-Eastern Regions of South Africa, 2014 to 2018, Milehna M Guarido, Isabel Fourie, Kgothatso Meno, Adriano Mendes, Megan A Riddin, Caitlin MacIntyre, Sontaga Manyana, Todd Johnson, Maarten Schrama, Erin E Gorsich, Basil D Brooke, Antonio Paulo G Almeida, and Marietjie Venter
CRABR-Net: A Contextual Relational Attention-Based Recognition Network for Remote Sensing Scene Objective, Ningbo Guo, Mingyong Jiang, Lijing Gao, Yizhuo Tang, Jinwei Han, and Xiangning Chen