Journal Articles
Open-access journal articles from McWilliams School of Biomedical Informatics at UTHealth Houston Faculty. School focus areas include Clinical and Cognitive Informatics, Biomedical Engineering, Public Health Informatics, and Translational Biomedical Informatics.
Submissions from 2023
MitoTrace: A Computational Framework for Analyzing Mitochondrial Variation in Single-Cell RNA Sequencing Data, Mingqiang Wang, Wankun Deng, David C Samuels, Zhongming Zhao, and Lukas M Simon
Syllable-PBWT for Space-Efficient Haplotype Long-Match Query, Victor Wang, Ardalan Naseri, Shaojie Zhang, and Degui Zhi
Multidrug Resistance in the Standardized Treatment of Colon Cancer Harboring a Rare Fibrosarcoma B-Type (BRAF) p.n581i Mutation: A Case Report, Xiaoyan Wang, Chenyi Zhao, Yang Gong, Ying Wang, and Feng Guo
Rapid-Query for Fast Identity by Descent Search and Genealogical Analysis, Yuan Wei, Ardalan Naseri, Degui Zhi, and Shaojie Zhang
The Impact Framework and Implementation for Accessible in Silico Clinical Phenotyping in the Digital Era, Andrew Wen, Huan He, Sunyang Fu, Sijia Liu, Kurt Miller, Liwei Wang, Kirk E Roberts, Steven D Bedrick, William R Hersh, and Hongfang Liu
A Transcriptomic Taxonomy of Mouse Brain-Wide Spinal Projecting Neurons, Carla C Winter, Anne Jacobi, Junfeng Su, Leeyup Chung, Cindy T J van Velthoven, Zizhen Yao, Changkyu Lee, Zicong Zhang, Shuguang Yu, Kun Gao, Geraldine Duque Salazar, Evgenii Kegeles, Yu Zhang, Makenzie C Tomihiro, Yiming Zhang, Zhiyun Yang, Junjie Zhu, Jing Tang, Xuan Song, Ryan J Donahue, Qing Wang, Delissa McMillen, Michael Kunst, Ning Wang, Kimberly A Smith, Gabriel E Romero, Michelle M Frank, Alexandra Krol, Riki Kawaguchi, Daniel H Geschwind, Guoping Feng, Lisa V Goodrich, Yuanyuan Liu, Bosiljka Tasic, Hongkui Zeng, and Zhigang He
A Multi-Site Randomized Trial of a Clinical Decision Support Intervention to Improve Problem List Completeness, Adam Wright, Richard Schreiber, David W Bates, Skye Aaron, Angela Ai, Raja Arul Cholan, Akshay Desai, Miguel Divo, David A Dorr, Thu-Trang Hickman, Salman Hussain, Shari Just, Brian Koh, Stuart Lipsitz, Dustin Mcevoy, Trent Rosenbloom, Elise Russo, David Yut-Chee Ting, Asli Weitkamp, and Dean F Sittig
The Integrative Studies on the Functional A-to-I RNA Editing Events in Human Cancers, Sijia Wu, Zhiwei Fan, Pora Kim, Liyu Huang, and Xiaobo Zhou
The Potential Regulation of A-to-I RNA Editing on Genes in Parkinson's Disease., Sijia Wu, Qiuping Xue, Xinyu Qin, Xiaoming Wu, Pora Kim, Jacqueline Chyr, Xiaobo Zhou, and Liyu Huang
Effect of Ultrasound on the Stability of Partial Nitrification: Under the Interference of Aeration Rate, Ying Xie, Yichun Zhu, Jieyuan Yang, Guangming Zhang, Shuai Tian, Junfeng Lian, and Shanyan Dong
Nanoscratch-Induced Formation of Metallic Micro/Nanostructures With Resin Masks, Mingyong Xin, Qihui Feng, Changbao Xu, Licong Cui, Jie Zhu, Yinkai Gan, and Bingjun Yu
Text Classification of Cancer Clinical Trial Eligibility Criteria, Yumeng Yang, Soumya Jayaraj, Ethan Ludmir, and Kirk Roberts
The Transcription Factor IRF4 Determines the Anti-tumor Immunity of CD8+ T cells, Hui Yan, Yulin Dai, Xiaolong Zhang, Hedong Zhang, Xiang Xiao, Jinfei Fu, Dawei Zou, Anze Yu, Tao Jiang, Xian C Li, Zhongming Zhao, and Wenhao Chen
Association of Frailty and the Expanded Operative Stress Score with Preoperative Acute Serious Conditions, Complications, and Mortality in Males Compared to Females: A Retrospective Observational Study, Qi Yan, Jeongsoo Kim, Daniel E Hall, Myrick C Shinall, Katherine Moll Reitz, Karyn B Stitzenberg, Lillian S Kao, Elizabeth L George, Ada Youk, Chen-Pin Wang, Jonathan C Silverstein, Elmer V Bernstam, and Paula K Shireman
Biological Correlates of the Effects of Auricular Point Acupressure on Pain, Chao Hsing Yeh, Nada Lukkahatai, Xinran Huang, Hulin Wu, Hongyu Wang, Jingyu Zhang, Xinyi Sun, and Thomas J Smith
Innovation Process and Industrial System of US Food and Drug Administration-Approved Software as a Medical Device: Review and Content Analysis, Jiakan Yu, Jiajie Zhang, and Shintaro Sengoku
Distribution of Serum Uric Acid Concentration and Its Association With Lipid Profiles: A Single-Center Retrospective Study in Children Aged 3 to 12 Years With Adenoid and Tonsillar Hypertrophy, Jiating Yu, Xin Liu, Honglei Ji, Yawei Zhang, Hanqiang Zhan, Ziyin Zhang, Jianguo Wen, and Zhimin Wang
Revisiting the Type Species of the Genus Homidia (Collembola, Entomobryidae), Guo-Qiang Zhang, Yu-Xin Zhao, and Feng Zhang
Predicting Multiple Sclerosis Severity With Multimodal Deep Neural Networks, Kai Zhang, John A Lincoln, Xiaoqian Jiang, Elmer V Bernstam, and Shayan Shams
Molecularly Defined and Spatially Resolved Cell Atlas of the Whole Mouse Brain, Meng Zhang, Xingjie Pan, Won Jung, Aaron R Halpern, Stephen W Eichhorn, Zhiyun Lei, Limor Cohen, Kimberly A Smith, Bosiljka Tasic, Zizhen Yao, Hongkui Zeng, and Xiaowei Zhuang
The Screening of the Protective Antigens of Aeromonas hydrophila Using the Reverse Vaccinology Approach: Potential Candidates for Subunit Vaccine Development, Ting Zhang, Minying Zhang, Zehua Xu, Yang He, Xiaoheng Zhao, Hanliang Cheng, Xiangning Chen, Jianhe Xu, and Zhujin Ding
A Case Report: A Patient Rescued by Va-Ecmo After Cardiac Arrest Triggered by Trigeminocardiac Reflex After Nasal Surgery, Xu Zhang, Bin Sun, Chen Pac-Soo, Daqing Ma, and Liwei Wang
Brain-Wide Correspondence of Neuronal Epigenomics and Distant Projections, Jingtian Zhou, Zhuzhu Zhang, May Wu, Hanqing Liu, Yan Pang, Anna Bartlett, Zihao Peng, Wubin Ding, Angeline Rivkin, Will N Lagos, Elora Williams, Cheng-Ta Lee, Paula Assakura Miyazaki, Andrew Aldridge, Qiurui Zeng, J L Angelo Salinda, Naomi Claffey, Michelle Liem, Conor Fitzpatrick, Lara Boggeman, Zizhen Yao, Kimberly A Smith, Bosiljka Tasic, Jordan Altshul, Mia A Kenworthy, Cynthia Valadon, Joseph R Nery, Rosa G Castanon, Neelakshi S Patne, Minh Vu, Mohammad Rashid, Matthew Jacobs, Tony Ito, Julia Osteen, Nora Emerson, Jasper Lee, Silvia Cho, Jon Rink, Hsiang-Hsuan Huang, António Pinto-Duartec, Bertha Dominguez, Jared B Smith, Carolyn O'Connor, Hongkui Zeng, Shengbo Chen, Kuo-Fen Lee, Eran A Mukamel, Xin Jin, M Margarita Behrens, Joseph R Ecker, and Edward M Callaway
A Novel NIH Research Grant Recommender Using BERT, Jie Zhu, Braja Gopal Patra, Hulin Wu, and Ashraf Yaseen
Digital Health Technologies for Peripartum Depression Management Among Low-Socioeconomic Populations: Perspectives From Patients, Providers, and Social Media Channels, Alexandra Zingg, Tavleen Singh, Amy Franklin, Angela Ross, Sudhakar Selvaraj, Jerrie Refuerzo, and Sahiti Myneni